All modules for which code is available
- indra.assemblers.cag_assembler
- indra.assemblers.cx_assembler
- indra.assemblers.english_assembler
- indra.assemblers.graph_assembler
- indra.assemblers.index_card_assembler
- indra.assemblers.pysb_assembler
- indra.assemblers.sbgn_assembler
- indra.assemblers.sif_assembler
- indra.belief
- indra.databases.biogrid_client
- indra.databases.cbio_client
- indra.databases.chebi_client
- indra.databases.chembl_client
- indra.databases.context_client
- indra.databases.hgnc_client
- indra.databases.ndex_client
- indra.databases.relevance_client
- indra.databases.uniprot_client
- indra.db.content_manager
- indra.db.database_manager
- indra.db.util
- indra.explanation.model_checker
- indra.literature
- indra.literature.crossref_client
- indra.literature.elsevier_client
- indra.literature.pmc_client
- indra.literature.pubmed_client
- indra.mechlinker
- indra.preassembler
- indra.preassembler.grounding_mapper
- indra.preassembler.hierarchy_manager
- indra.preassembler.sitemapper
- indra.sources.bel.bel_api
- indra.sources.bel.belrdf_processor
- indra.sources.bel.pybel_processor
- indra.sources.biopax.biopax_api
- indra.sources.biopax.pathway_commons_client
- indra.sources.biopax.processor
- indra.sources.eidos.eidos_api
- indra.sources.eidos.eidos_reader
- indra.sources.eidos.processor
- indra.sources.geneways.geneways_api
- indra.sources.geneways.processor
- indra.sources.ndex_cx.ndex_cx_api
- indra.sources.ndex_cx.processor
- indra.sources.reach.processor
- indra.sources.reach.reach_api
- indra.sources.reach.reach_reader
- indra.sources.tees.processor
- indra.sources.tees.tees_api
- indra.sources.trips.processor
- indra.sources.trips.trips_api
- indra.sources.trips.trips_client
- indra.statements
- indra.tools.assemble_corpus
- indra.tools.executable_subnetwork
- indra.tools.gene_network
- indra.tools.incremental_model
- indra.tools.machine.config