INDRA
1.6
  • License and funding
  • Installation
  • Getting started with INDRA
  • INDRA modules reference
  • Tutorials
    • Using natural language to build models
    • Large-Scale Machine Reading with Starcluster
    • Large-Scale Machine Reading with Amazon Batch
    • Assembling everything known about a particular gene
  • REST API
INDRA
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  • Tutorials
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TutorialsΒΆ

  • Using natural language to build models
    • Read INDRA Statements from a natural language string
    • Assemble the INDRA Statements into a rule-based executable model
    • Exporting the model into other common formats
  • Large-Scale Machine Reading with Starcluster
    • Install REACH
    • Install Amazon S3 support
    • Install other dependencies
    • Assemble a Corpus of PMIDs
    • Process the papers with REACH
    • Extract INDRA Statements from the REACH output on S3
    • Running the whole pipeline with one script
  • Large-Scale Machine Reading with Amazon Batch
    • How it Works
  • Assembling everything known about a particular gene
    • Collect mechanisms from PathwayCommons and the BEL Large Corpus
    • Collect a list of publications that discuss the gene of interest
    • Get the full text or abstract corresponding to the publications
    • Read the content of the publications
    • Combine all statements and run pre-assembly
    • Assemble the statements into a network model
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© Copyright 2017, B. M. Gyori, J. A. Bachman.

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