spacr.mediar¶
Module Contents¶
- spacr.mediar.display_imgs_in_list(lists_of_imgs, cmaps=None)[source]¶
Displays images from multiple lists side by side. Each row will display one image from each list (lists_of_imgs[i][j] is the j-th image in the i-th list).
- Parameters:
lists_of_imgs – A list of lists, where each inner list contains images.
cmaps – List of colormaps to use for each list (optional). If not provided, defaults to ‘gray’ for all lists.
- spacr.mediar.normalize_image(image, lower_percentile=0.0, upper_percentile=99.5)[source]¶
Normalize an image based on the 0.0 and 99.5 percentiles.
- Parameters:
image – Input image (numpy array).
lower_percentile – Lower percentile (default is 0.0).
upper_percentile – Upper percentile (default is 99.5).
- Returns:
Normalized image (numpy array).
- class spacr.mediar.MEDIARPredictor(input_path=None, output_path=None, device=None, model='ensemble', roi_size=512, overlap=0.6, finetuned_weights=False, test=False, use_tta=False, normalize=True, quantiles=[0.0, 99.5])[source]¶