fhirpack.extraction package
Contents
fhirpack.extraction package#
Submodules#
fhirpack.extraction.base module#
- class fhirpack.extraction.base.BaseExtractorMixin[source]#
Bases:
object
- __dict__ = mappingproxy({'__module__': 'fhirpack.extraction.base', 'getReferences': <function BaseExtractorMixin.getReferences>, 'getResources': <function BaseExtractorMixin.getResources>, 'searchResources': <function BaseExtractorMixin.searchResources>, 'getConversionPath': <function BaseExtractorMixin.getConversionPath>, 'getAbsolutePaths': <function BaseExtractorMixin.getAbsolutePaths>, 'getURLBytes': <function BaseExtractorMixin.getURLBytes>, 'getFromFiles': <function BaseExtractorMixin.getFromFiles>, 'getDICOMInstances': <function BaseExtractorMixin.getDICOMInstances>, '__dict__': <attribute '__dict__' of 'BaseExtractorMixin' objects>, '__weakref__': <attribute '__weakref__' of 'BaseExtractorMixin' objects>, '__doc__': None, '__annotations__': {}})#
- __doc__ = None#
- __module__ = 'fhirpack.extraction.base'#
- __weakref__#
list of weak references to the object (if defined)
- getAbsolutePaths(paths: list[str], input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None)[source]#
- getConversionPath(sourceType: str, targetType: str)[source]#
This method retrieves the needed fhir serach param (field) and the respective path for a source-target pair from the handler ditcionary
- getDICOMInstances(input: Optional[list[str]] = None, operateOnCol: str = 'data', resultInCol: Optional[str] = None, params: Optional[dict] = None, inPlace: dict = False)[source]#
- getFromFiles(input: list[str])[source]#
Creates a Frame object from json files containing fhir resources
- getReferences(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, params: Optional[dict] = None, ignoreFrame: bool = False, raw: bool = False)[source]#
- getResources(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, resourceType: Optional[str] = None, metaResourceType: Optional[str] = None, ignoreFrame: bool = False, raw: bool = False, progressSuffix: str = '')[source]#
- getURLBytes(input: Optional[list[str]] = None, operateOnCol: str = 'data', resultInCol: Optional[str] = None, params: dict = {})[source]#
- searchResources(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, resourceType: Optional[str] = None, metaResourceType: Optional[str] = None, ignoreFrame: bool = True, raw: bool = False, progressSuffix: str = '')[source]#
fhirpack.extraction.base_test module#
fhirpack.extraction.condition module#
fhirpack.extraction.condition_test module#
fhirpack.extraction.diagnosticreport module#
fhirpack.extraction.documentreference module#
fhirpack.extraction.encounter module#
fhirpack.extraction.endpoint module#
fhirpack.extraction.episodeofcare module#
fhirpack.extraction.familymemberhistory module#
fhirpack.extraction.imagingstudy module#
fhirpack.extraction.list module#
- class fhirpack.extraction.list.ExtractorListMixin[source]#
Bases:
fhirpack.extraction.base.BaseExtractorMixin
- __doc__ = None#
- __module__ = 'fhirpack.extraction.list'#
fhirpack.extraction.medicationadministration module#
fhirpack.extraction.medicationrequest module#
fhirpack.extraction.observation module#
fhirpack.extraction.patient module#
- class fhirpack.extraction.patient.ExtractorPatientMixin[source]#
Bases:
fhirpack.extraction.base.BaseExtractorMixin
- __doc__ = None#
- __module__ = 'fhirpack.extraction.patient'#
- getLinkedPatients(input: Optional[Union[list[str], list[fhirpy.lib.SyncFHIRReference], list[fhirpy.lib.SyncFHIRResource]]] = None, searchParams: Optional[dict] = None, params: Optional[dict] = None, ignoreFrame: bool = False, raw: bool = False)[source]#
fhirpack.extraction.patient_test module#
fhirpack.extraction.sample module#
- class fhirpack.extraction.sample.BaseExtractorMixin[source]#
Bases:
object
- __dict__ = mappingproxy({'__module__': 'fhirpack.extraction.sample', 'getSampleExtractionMethod': <function BaseExtractorMixin.getSampleExtractionMethod>, '__dict__': <attribute '__dict__' of 'BaseExtractorMixin' objects>, '__weakref__': <attribute '__weakref__' of 'BaseExtractorMixin' objects>, '__doc__': None, '__annotations__': {}})#
- __doc__ = None#
- __module__ = 'fhirpack.extraction.sample'#
- __weakref__#
list of weak references to the object (if defined)
Module contents#
- class fhirpack.extraction.ExtractorMixin[source]#
Bases:
fhirpack.extraction.observation.ExtractorObservationMixin
,fhirpack.extraction.patient.ExtractorPatientMixin
,fhirpack.extraction.condition.ExtractorConditionMixin
,fhirpack.extraction.diagnosticreport.ExtractorDiagnosticReportMixin
,fhirpack.extraction.documentreference.ExtractorDocumentReferenceMixin
,fhirpack.extraction.encounter.ExtractorEncounterMixin
,fhirpack.extraction.episodeofcare.ExtractorEpisodeOfCareMixin
,fhirpack.extraction.familymemberhistory.ExtractorFamilyMemberHistoryMixin
,fhirpack.extraction.medicationrequest.ExtractorMedicationRequestMixin
,fhirpack.extraction.medicationadministration.ExtractorMedicationAdministrationMixin
,fhirpack.extraction.list.ExtractorListMixin
,fhirpack.extraction.imagingstudy.ExtractorImagingStudyMixin
,fhirpack.extraction.endpoint.ExtractorEndpointMixin
- __doc__ = None#
- __module__ = 'fhirpack.extraction'#