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DNA

Protein

Base substitution rates JC F81 K2P HKY TN TNe K3P K3Pu TPM2 TPM2u TPM3 TPM3u TIM TIMe TIM2 TIM2e TIM3 TIM3e TVM TVMe SYM GTR

Base frequencies - F FO FQ

Rate heterogeneity across sites - I G I+G R I+R

Amino-acid exchange rate matrices Blosum62 cpREV Dayhoff DCMut FLU HIVb HIVw JTT JTTDCMut LG mtART mtMAM mtREV mtZOA mtMet mtVer mtInv Poisson PMB rtREV VT WAG GTR20

Protein mixture models - C10 C20 C30 C40 C50 C60 EX2 EX3 EHO UL2 UL3 EX_EHO LG4M LG4X CF4

Amino-acid frequencies - F FO FQ

Rate heterogeneity across sites - I G I+G R I+R

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