Model Configuration#

Note

most of the model is defined within a YAML file (myconfig.yml)

myconfig.yml#

root#

root: /home/phyto/CoccoML/

where to save root files

path_out#

path_out: ModelOutput/

where to save the model output (root + path_out)

traits#

traits: /home/phyto/CoccoML/data/traits.csv

scale_X#

scale_X: True

verbose#

verbose: 1

seed#

seed : 1

n_threads#

n_threads : 2 how many cpu threads to use

cv#

cv : 3

predict_probability#

predict_probability: False

ensemble_config#

regressor: False

classifier: True

m1: “rf”

m2: “xgb”

m3: “knn”