LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
conf/datastore.default.yml
conf/logging.default.yml
docker/luna_tutorial/docker-compose.yml
docker/luna_tutorial/vmount/provision.py
docker/luna_tutorial/vmount/classifier/__init__.py
docker/luna_tutorial/vmount/classifier/analyze.py
docker/luna_tutorial/vmount/classifier/data.py
docker/luna_tutorial/vmount/classifier/losses.py
docker/luna_tutorial/vmount/classifier/model.py
docker/luna_tutorial/vmount/classifier/utils.py
docker/luna_tutorial/vmount/conf/app_config.yaml
docker/luna_tutorial/vmount/conf/collect_tiles.yaml
docker/luna_tutorial/vmount/conf/dsa_app_config.yaml
docker/luna_tutorial/vmount/conf/dsa_point_annotation.yaml
docker/luna_tutorial/vmount/conf/dsa_regional_annotation.yaml
docker/luna_tutorial/vmount/conf/generate_tiles.yaml
docker/luna_tutorial/vmount/conf/generate_tiles_all_tissues.yaml
docker/luna_tutorial/vmount/conf/infer_tiles.yaml
docker/luna_tutorial/vmount/conf/load_slides.yaml
docker/luna_tutorial/vmount/conf/manifest.yaml
docker/luna_tutorial/vmount/conf/regional_annotation_config.yaml
docker/luna_tutorial/vmount/conf/visualize_tiles.yaml
docker/luna_tutorial/vmount/conf/wsi_config.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/app_config.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/collect_tiles.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/generate_tiles_test.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/generate_tiles_train.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/infer_tiles.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/load_slides.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/regional_annotation_config.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/visualize_tiles.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/wsi_config.yaml
docker/luna_tutorial/vmount/conf/snakemake-configs/scripts/collect_tiles_train.py
docker/luna_tutorial/vmount/conf/snakemake-configs/scripts/generate_tiles_train.py
docker/luna_tutorial/vmount/conf/snakemake-configs/scripts/load_slides.py
docker/luna_tutorial/vmount/conf/snakemake-configs/scripts/train_model.py
docker/luna_tutorial/vmount/conf/snakemake-configs/scripts/update_patient_ids.py
docker/luna_tutorial/vmount/dsa_input/123_label.bmp
docs/conf.py
pyluna-common/__init__.py
pyluna-common/setup.py
pyluna-common/luna/common/CodeTimer.py
pyluna-common/luna/common/DataStore.py
pyluna-common/luna/common/Neo4jConnection.py
pyluna-common/luna/common/Node.py
pyluna-common/luna/common/PipelineBuilder.py
pyluna-common/luna/common/__init__.py
pyluna-common/luna/common/adapters.py
pyluna-common/luna/common/config.py
pyluna-common/luna/common/constants.py
pyluna-common/luna/common/custom_logger.py
pyluna-common/luna/common/dask.py
pyluna-common/luna/common/sparksession.py
pyluna-common/luna/common/stats.py
pyluna-common/luna/common/utils.py
pyluna-common/tests/__init__.py
pyluna-common/tests/luna/__init__.py
pyluna-common/tests/luna/common/__init__.py
pyluna-common/tests/luna/common/another_test_config.yml
pyluna-common/tests/luna/common/test_config.py
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pyluna-common/tests/luna/common/test_constants.py
pyluna-common/tests/luna/common/test_data_ingestion_template.yml
pyluna-common/tests/luna/common/test_datastore.py
pyluna-common/tests/luna/common/test_graph_enum.py
pyluna-common/tests/luna/common/test_logger.py
pyluna-common/tests/luna/common/test_utils.py
pyluna-common/tests/luna/common/testdata/data_ingestion_template_invalid.yml
pyluna-common/tests/luna/common/testdata/data_ingestion_template_valid.yml
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pyluna-common/tests/luna/common/testdata/data_ingestion_template_valid_empty_dataset_2.yml
pyluna-common/tests/luna/common/testdata/geojson_data.yaml
pyluna-common/tests/luna/common/testdata/simple_output_directory/metadata.yml
pyluna-core/__init__.py
pyluna-core/setup.py
pyluna-core/luna/data_ingestion_template_schema.yml
pyluna-core/luna/transforms.py
pyluna-core/luna/api/__init__.py
pyluna-core/luna/api/radiologyPreprocessingLibrary/__init__.py
pyluna-core/luna/api/radiologyPreprocessingLibrary/app.py
pyluna-core/luna/api/radiologyPreprocessingLibrary/service.py
pyluna-core/luna/clinical/__init__.py
pyluna-core/luna/clinical/proxy_table/__init__.py
pyluna-core/luna/clinical/proxy_table/generate.py
pyluna-core/luna/get_pathology_annotations/__init__.py
pyluna-core/luna/get_pathology_annotations/get_pathology_annotations.py
pyluna-core/luna/integration/__init__.py
pyluna-core/luna/integration/qin_radiology_example.py
pyluna-core/luna/pipelines/lung_radiomics_recist.yaml
pyluna-core/luna/pipelines/qin_tcia_example.yaml
pyluna-core/luna/pipelines/lung_radiomics_v1/collect_results_original_label.json
pyluna-core/luna/pipelines/lung_radiomics_v1/collect_results_pertubation_label.json
pyluna-core/luna/pipelines/lung_radiomics_v1/driver.py
pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_original_1.json
pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_original_2.json
pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_original_3.json
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pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_original_6.json
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pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_pertubation_2.json
pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_pertubation_3.json
pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_pertubation_4.json
pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_pertubation_5.json
pyluna-core/luna/pipelines/lung_radiomics_v1/extract_radiomics_pertubation_6.json
pyluna-core/luna/pipelines/lung_radiomics_v1/generate_scan.json
pyluna-core/luna/pipelines/lung_radiomics_v1/load_dicom.json
pyluna-core/luna/pipelines/lung_radiomics_v1/randomize_contours.json
pyluna-core/luna/pipelines/run_eng_inference/driver.py
pyluna-core/luna/pipelines/run_eng_inference/infer_tile_labels_resnet18.json
pyluna-core/luna/pipelines/run_eng_inference/visualize_model_inference.json
pyluna-core/luna/pipelines/run_ov_inference/driver.py
pyluna-core/luna/pipelines/run_ov_inference/infer_tile_labels_resnet18.json
pyluna-core/luna/pipelines/run_ov_inference/visualize_model_inference.json
pyluna-core/luna/pipelines/tile_slides_20x_128px/collect_tile_results.json
pyluna-core/luna/pipelines/tile_slides_20x_128px/driver.py
pyluna-core/luna/pipelines/tile_slides_20x_128px/generate_tile_labels_with_ov_labels.json
pyluna-core/luna/pipelines/tile_slides_20x_128px/save_tiles.json
pyluna-core/luna/pipelines/tile_slides_20x_128px/visualize_tile_labels.json
pyluna-core/luna/project/__init__.py
pyluna-core/luna/project/generate.py
pyluna-core/tests/__init__.py
pyluna-core/tests/luna/__init__.py
pyluna-core/tests/luna/arc_test_data_ingestion_template_schema.py
pyluna-core/tests/luna/arc_test_dicom_to_graph.py
pyluna-core/tests/luna/arc_test_preprocess_feature_integration.py
pyluna-core/tests/luna/api/__init__.py
pyluna-core/tests/luna/api/radiologyPreprocessingLibrary/__init__.py
pyluna-core/tests/luna/api/radiologyPreprocessingLibrary/test_app.py
pyluna-core/tests/luna/api/radiologyPreprocessingLibrary/test_app_config.yaml
pyluna-core/tests/luna/api/radiologyPreprocessingLibrary/testdata/1.dcm
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pyluna-core/tests/luna/clinical/__init__.py
pyluna-core/tests/luna/clinical/proxy_table/__init__.py
pyluna-core/tests/luna/clinical/testdata/data_csv_config.yaml
pyluna-core/tests/luna/clinical/testdata/data_error_config.yaml
pyluna-core/tests/luna/clinical/testdata/data_tsv_config.yaml
pyluna-core/tests/luna/get_pathology_annotations/__init__.py
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