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atomate 0.5.5 documentation
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_
__init__() (atomate.common.firetasks.tests.test_parse_outputs.TestDrone method)
(atomate.feff.database.FeffCalcDb method)
(atomate.feff.fireworks.core.EELSFW method)
(atomate.feff.fireworks.core.EXAFSPathsFW method)
(atomate.feff.fireworks.core.XASFW method)
(atomate.lammps.database.LammpsCalcDb method)
(atomate.utils.database.CalcDb method)
(atomate.utils.fileio.FileClient method)
(atomate.vasp.builders.bandgap_estimation.BandgapEstimationBuilder method)
(atomate.vasp.builders.boltztrap_materials.BoltztrapMaterialsBuilder method)
(atomate.vasp.builders.dielectric.DielectricBuilder method)
(atomate.vasp.builders.file_materials.FileMaterialsBuilder method)
(atomate.vasp.builders.fix_tasks.FixTasksBuilder method)
(atomate.vasp.builders.materials_descriptor.MaterialsDescriptorBuilder method)
(atomate.vasp.builders.materials_ehull.MaterialsEhullBuilder method)
(atomate.vasp.builders.tags.TagsBuilder method)
(atomate.vasp.builders.tasks_materials.TasksMaterialsBuilder method)
(atomate.vasp.database.VaspCalcDb method)
(atomate.vasp.drones.VaspDrone method)
(atomate.vasp.submission_filter.SubmissionFilter method)
A
abspath() (atomate.utils.fileio.FileClient method)
AbstractBuilder (class in atomate.vasp.builders.base)
AddPathsToFilepadTask (class in atomate.feff.firetasks.parse_outputs)
as_dict() (atomate.vasp.drones.VaspDrone method)
(atomate.vasp.submission_filter.SubmissionFilter method)
assimilate() (atomate.common.firetasks.tests.test_parse_outputs.TestDrone method)
(atomate.vasp.drones.VaspDrone method)
atomate (module)
atomate.common (module)
atomate.common.firetasks (module)
atomate.common.firetasks.glue_tasks (module)
atomate.common.firetasks.parse_outputs (module)
atomate.common.firetasks.run_calc (module)
atomate.common.firetasks.tests (module)
atomate.common.firetasks.tests.test_glue_tasks (module)
atomate.common.firetasks.tests.test_parse_outputs (module)
atomate.feff (module)
atomate.feff.database (module)
atomate.feff.firetasks (module)
atomate.feff.firetasks.glue_tasks (module)
atomate.feff.firetasks.parse_outputs (module)
atomate.feff.firetasks.run_calc (module)
atomate.feff.firetasks.tests (module)
atomate.feff.firetasks.tests.test_tasks (module)
atomate.feff.firetasks.write_inputs (module)
atomate.feff.fireworks (module)
atomate.feff.fireworks.core (module)
atomate.feff.fireworks.tests (module)
atomate.feff.fireworks.tests.test_fireworks (module)
atomate.feff.workflows (module)
atomate.feff.workflows.core (module)
atomate.feff.workflows.tests (module)
atomate.feff.workflows.tests.test_eels_workflows (module)
atomate.feff.workflows.tests.test_exafs_scattering_paths (module)
atomate.feff.workflows.tests.test_xas_workflows (module)
atomate.lammps (module)
atomate.lammps.database (module)
atomate.lammps.firetasks (module)
atomate.lammps.firetasks.parse_outputs (module)
atomate.lammps.firetasks.run_calc (module)
atomate.lammps.firetasks.write_inputs (module)
atomate.lammps.workflows (module)
atomate.lammps.workflows.core (module)
atomate.tools (module)
atomate.tools.analysis (module)
atomate.tools.post_process (module)
atomate.tools.post_process.gibbs (module)
atomate.tools.post_process.plot_raman (module)
atomate.tools.tests (module)
atomate.utils (module)
atomate.utils.database (module)
atomate.utils.fileio (module)
atomate.utils.testing (module)
atomate.utils.tests (module)
atomate.utils.tests.test_loaders (module)
atomate.utils.tests.test_utils (module)
atomate.utils.utils (module)
atomate.vasp (module)
atomate.vasp.analysis (module)
atomate.vasp.analysis.phonopy (module)
atomate.vasp.builders (module)
atomate.vasp.builders.bandgap_estimation (module)
atomate.vasp.builders.base (module)
atomate.vasp.builders.boltztrap_materials (module)
atomate.vasp.builders.dielectric (module)
atomate.vasp.builders.file_materials (module)
atomate.vasp.builders.fix_tasks (module)
atomate.vasp.builders.materials_descriptor (module)
atomate.vasp.builders.materials_ehull (module)
atomate.vasp.builders.tags (module)
atomate.vasp.builders.tasks_materials (module)
atomate.vasp.config (module)
atomate.vasp.database (module)
atomate.vasp.drones (module)
atomate.vasp.examples (module)
atomate.vasp.examples.builders_example (module)
atomate.vasp.firetasks (module)
atomate.vasp.firetasks.glue_tasks (module)
atomate.vasp.firetasks.neb_tasks (module)
atomate.vasp.firetasks.run_calc (module)
atomate.vasp.firetasks.tests (module)
atomate.vasp.firetasks.tests.test_copy (module)
atomate.vasp.firetasks.tests.test_write_vasp (module)
atomate.vasp.firetasks.write_inputs (module)
atomate.vasp.fireworks (module)
atomate.vasp.submission_filter (module)
atomate.vasp.tests (module)
atomate.vasp.tests.test_drones (module)
atomate.vasp.tests.test_setup (module)
atomate.vasp.vasp_config (module)
atomate.vasp.workflows (module)
atomate.vasp.workflows.base (module)
atomate.vasp.workflows.base.core (module)
atomate.vasp.workflows.presets (module)
atomate.vasp.workflows.tests (module)
AtomateTest (class in atomate.utils.testing)
B
BandgapEstimationBuilder (class in atomate.vasp.builders.bandgap_estimation)
BoltztrapMaterialsBuilder (class in atomate.vasp.builders.boltztrap_materials)
build_indexes() (atomate.feff.database.FeffCalcDb method)
(atomate.lammps.database.LammpsCalcDb method)
(atomate.utils.database.CalcDb method)
(atomate.vasp.database.VaspCalcDb method)
C
CalcDb (class in atomate.utils.database)
CheckBandgap (class in atomate.vasp.firetasks.glue_tasks)
CheckStability (class in atomate.vasp.firetasks.glue_tasks)
copy() (atomate.utils.fileio.FileClient method)
copy_files() (atomate.common.firetasks.glue_tasks.CopyFiles method)
(atomate.vasp.firetasks.glue_tasks.CopyVaspOutputs method)
CopyFeffOutputs (class in atomate.feff.firetasks.glue_tasks)
CopyFiles (class in atomate.common.firetasks.glue_tasks)
CopyVaspOutputs (class in atomate.vasp.firetasks.glue_tasks)
D
DielectricBuilder (class in atomate.vasp.builders.dielectric)
E
EELSFW (class in atomate.feff.fireworks.core)
env_chk() (in module atomate.utils.utils)
EXAFSPathsFW (class in atomate.feff.fireworks.core)
exists() (atomate.utils.fileio.FileClient static method)
F
FeffCalcDb (class in atomate.feff.database)
FileClient (class in atomate.utils.fileio)
FileMaterialsBuilder (class in atomate.vasp.builders.file_materials)
filter_files() (atomate.vasp.drones.VaspDrone method)
FixTasksBuilder (class in atomate.vasp.builders.fix_tasks)
from_db_file() (atomate.utils.database.CalcDb class method)
from_dict() (atomate.vasp.drones.VaspDrone class method)
(atomate.vasp.submission_filter.SubmissionFilter class method)
from_file() (atomate.vasp.builders.bandgap_estimation.BandgapEstimationBuilder static method)
(atomate.vasp.builders.base.AbstractBuilder class method)
(atomate.vasp.builders.boltztrap_materials.BoltztrapMaterialsBuilder class method)
(atomate.vasp.builders.dielectric.DielectricBuilder static method)
(atomate.vasp.builders.file_materials.FileMaterialsBuilder class method)
(atomate.vasp.builders.fix_tasks.FixTasksBuilder class method)
(atomate.vasp.builders.materials_descriptor.MaterialsDescriptorBuilder class method)
(atomate.vasp.builders.materials_ehull.MaterialsEhullBuilder class method)
(atomate.vasp.builders.tags.TagsBuilder class method)
(atomate.vasp.builders.tasks_materials.TasksMaterialsBuilder class method)
FuncTest (class in atomate.utils.tests.test_loaders)
G
generate_doc() (atomate.vasp.drones.VaspDrone method)
get_band_structure() (atomate.vasp.database.VaspCalcDb method)
get_calc_loc() (in module atomate.common.firetasks.glue_tasks)
get_collection() (in module atomate.tools.post_process.gibbs)
get_data() (in module atomate.tools.post_process.gibbs)
get_db() (in module atomate.tools.post_process.gibbs)
get_dos() (atomate.vasp.database.VaspCalcDb method)
get_feff_input_set_obj() (in module atomate.feff.firetasks.write_inputs)
get_freq_intensities() (in module atomate.tools.post_process.plot_raman)
get_fws_and_tasks() (in module atomate.utils.utils)
get_gibbs() (in module atomate.tools.post_process.gibbs)
get_logger() (in module atomate.utils.utils)
get_meta_from_structure() (in module atomate.utils.utils)
get_mongolike() (in module atomate.utils.utils)
get_phonopy() (in module atomate.tools.post_process.gibbs)
get_phonopy_gibbs() (in module atomate.tools.analysis)
(in module atomate.vasp.analysis.phonopy)
get_phonopy_qha() (in module atomate.tools.analysis)
(in module atomate.vasp.analysis.phonopy)
get_phonopy_thermal_expansion() (in module atomate.tools.analysis)
(in module atomate.vasp.analysis.phonopy)
get_ssh_connection() (atomate.utils.fileio.FileClient static method)
get_task_collection() (atomate.utils.testing.AtomateTest method)
get_task_database() (atomate.utils.testing.AtomateTest method)
get_valid_paths() (atomate.common.firetasks.tests.test_parse_outputs.TestDrone method)
(atomate.vasp.drones.VaspDrone method)
get_wf() (in module atomate.lammps.workflows.core)
(in module atomate.vasp.workflows.base.core)
get_wf_eels() (in module atomate.feff.workflows.core)
get_wf_exafs_paths() (in module atomate.feff.workflows.core)
get_wf_from_spec_dict() (in module atomate.utils.utils)
get_wf_xas() (in module atomate.feff.workflows.core)
glob() (atomate.utils.fileio.FileClient method)
I
insert() (atomate.utils.database.CalcDb method)
insert_gridfs() (atomate.vasp.database.VaspCalcDb method)
insert_task() (atomate.vasp.database.VaspCalcDb method)
L
LammpsCalcDb (class in atomate.lammps.database)
LammpsToDBTask (class in atomate.lammps.firetasks.parse_outputs)
listdir() (atomate.utils.fileio.FileClient method)
load_class() (in module atomate.utils.utils)
lorentzian() (in module atomate.tools.post_process.plot_raman)
M
MaterialsDescriptorBuilder (class in atomate.vasp.builders.materials_descriptor)
MaterialsEhullBuilder (class in atomate.vasp.builders.materials_ehull)
mid_to_str() (atomate.vasp.builders.tasks_materials.TasksMaterialsBuilder method)
ModifyIncar (class in atomate.vasp.firetasks.write_inputs)
N
NO_POTCARS (atomate.vasp.submission_filter.SubmissionFilter attribute)
nvt_wf() (in module atomate.lammps.workflows.core)
O
optional_params (atomate.common.firetasks.glue_tasks.CopyFiles attribute)
(atomate.common.firetasks.glue_tasks.PassCalcLocs attribute)
(atomate.common.firetasks.glue_tasks.PassResult attribute)
(atomate.common.firetasks.parse_outputs.ToDbTask attribute)
(atomate.common.firetasks.run_calc.RunCommand attribute)
(atomate.common.firetasks.run_calc.RunCustodianFromObjects attribute)
(atomate.feff.firetasks.glue_tasks.CopyFeffOutputs attribute)
(atomate.feff.firetasks.parse_outputs.AddPathsToFilepadTask attribute)
(atomate.feff.firetasks.parse_outputs.SpectrumToDbTask attribute)
(atomate.feff.firetasks.write_inputs.WriteEXAFSPaths attribute)
(atomate.feff.firetasks.write_inputs.WriteFeffFromIOSet attribute)
(atomate.lammps.firetasks.parse_outputs.LammpsToDBTask attribute)
(atomate.lammps.firetasks.run_calc.RunPackmol attribute)
(atomate.lammps.firetasks.write_inputs.WriteLammpsFromIOSet attribute)
(atomate.vasp.firetasks.glue_tasks.CheckBandgap attribute)
(atomate.vasp.firetasks.glue_tasks.CheckStability attribute)
(atomate.vasp.firetasks.glue_tasks.CopyVaspOutputs attribute)
(atomate.vasp.firetasks.neb_tasks.RunNEBVaspFake attribute)
(atomate.vasp.firetasks.neb_tasks.TransferNEBTask attribute)
(atomate.vasp.firetasks.neb_tasks.WriteNEBFromEndpoints attribute)
(atomate.vasp.firetasks.neb_tasks.WriteNEBFromImages attribute)
(atomate.vasp.firetasks.run_calc.RunBoltztrap attribute)
(atomate.vasp.firetasks.run_calc.RunVaspCustodian attribute)
(atomate.vasp.firetasks.run_calc.RunVaspDirect attribute)
(atomate.vasp.firetasks.run_calc.RunVaspFake attribute)
(atomate.vasp.firetasks.write_inputs.ModifyIncar attribute)
(atomate.vasp.firetasks.write_inputs.WriteTransmutedStructureIOSet attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspFromIOSet attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspFromPMGObjects attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspHSEBSFromPrev attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspNSCFFromPrev attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspSOCFromPrev attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspStaticFromPrev attribute)
P
pass_vasp_result() (in module atomate.vasp.firetasks.glue_tasks)
PassCalcLocs (class in atomate.common.firetasks.glue_tasks)
PassResult (class in atomate.common.firetasks.glue_tasks)
plot_spectrum() (in module atomate.tools.post_process.plot_raman)
post_process() (atomate.vasp.drones.VaspDrone method)
process_vasprun() (atomate.vasp.drones.VaspDrone method)
R
raman_intensity() (in module atomate.tools.post_process.plot_raman)
recursive_get_result() (in module atomate.utils.utils)
required_params (atomate.common.firetasks.glue_tasks.PassCalcLocs attribute)
(atomate.common.firetasks.glue_tasks.PassResult attribute)
(atomate.common.firetasks.parse_outputs.ToDbTask attribute)
(atomate.common.firetasks.run_calc.RunCommand attribute)
(atomate.common.firetasks.run_calc.RunCustodianFromObjects attribute)
(atomate.feff.firetasks.parse_outputs.SpectrumToDbTask attribute)
(atomate.feff.firetasks.run_calc.RunFeffDirect attribute)
(atomate.feff.firetasks.write_inputs.WriteEXAFSPaths attribute)
(atomate.feff.firetasks.write_inputs.WriteFeffFromIOSet attribute)
(atomate.lammps.firetasks.parse_outputs.LammpsToDBTask attribute)
(atomate.lammps.firetasks.run_calc.RunLammpsDirect attribute)
(atomate.lammps.firetasks.run_calc.RunPackmol attribute)
(atomate.lammps.firetasks.write_inputs.WriteLammpsFromIOSet attribute)
(atomate.vasp.firetasks.glue_tasks.CheckBandgap attribute)
(atomate.vasp.firetasks.glue_tasks.CheckStability attribute)
(atomate.vasp.firetasks.neb_tasks.RunNEBVaspFake attribute)
(atomate.vasp.firetasks.neb_tasks.TransferNEBTask attribute)
(atomate.vasp.firetasks.neb_tasks.WriteNEBFromEndpoints attribute)
(atomate.vasp.firetasks.neb_tasks.WriteNEBFromImages attribute)
(atomate.vasp.firetasks.run_calc.RunVaspCustodian attribute)
(atomate.vasp.firetasks.run_calc.RunVaspDirect attribute)
(atomate.vasp.firetasks.run_calc.RunVaspFake attribute)
(atomate.vasp.firetasks.write_inputs.WriteNormalmodeDisplacedPoscar attribute)
(atomate.vasp.firetasks.write_inputs.WriteTransmutedStructureIOSet attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspFromIOSet attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspHSEBSFromPrev attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspNSCFFromPrev attribute)
(atomate.vasp.firetasks.write_inputs.WriteVaspSOCFromPrev attribute)
reset() (atomate.feff.database.FeffCalcDb method)
(atomate.lammps.database.LammpsCalcDb method)
(atomate.utils.database.CalcDb method)
(atomate.vasp.builders.bandgap_estimation.BandgapEstimationBuilder method)
(atomate.vasp.builders.base.AbstractBuilder method)
(atomate.vasp.builders.boltztrap_materials.BoltztrapMaterialsBuilder method)
(atomate.vasp.builders.dielectric.DielectricBuilder method)
(atomate.vasp.builders.file_materials.FileMaterialsBuilder method)
(atomate.vasp.builders.fix_tasks.FixTasksBuilder method)
(atomate.vasp.builders.materials_descriptor.MaterialsDescriptorBuilder method)
(atomate.vasp.builders.materials_ehull.MaterialsEhullBuilder method)
(atomate.vasp.builders.tags.TagsBuilder method)
(atomate.vasp.builders.tasks_materials.TasksMaterialsBuilder method)
(atomate.vasp.database.VaspCalcDb method)
run() (atomate.vasp.builders.bandgap_estimation.BandgapEstimationBuilder method)
(atomate.vasp.builders.base.AbstractBuilder method)
(atomate.vasp.builders.boltztrap_materials.BoltztrapMaterialsBuilder method)
(atomate.vasp.builders.dielectric.DielectricBuilder method)
(atomate.vasp.builders.file_materials.FileMaterialsBuilder method)
(atomate.vasp.builders.fix_tasks.FixTasksBuilder method)
(atomate.vasp.builders.materials_descriptor.MaterialsDescriptorBuilder method)
(atomate.vasp.builders.materials_ehull.MaterialsEhullBuilder method)
(atomate.vasp.builders.tags.TagsBuilder method)
(atomate.vasp.builders.tasks_materials.TasksMaterialsBuilder method)
(in module atomate.tools.post_process.plot_raman)
run_task() (atomate.common.firetasks.glue_tasks.CopyFiles method)
(atomate.common.firetasks.glue_tasks.PassCalcLocs method)
(atomate.common.firetasks.glue_tasks.PassResult method)
(atomate.common.firetasks.parse_outputs.ToDbTask method)
(atomate.common.firetasks.run_calc.RunCommand method)
(atomate.common.firetasks.run_calc.RunCustodianFromObjects method)
(atomate.feff.firetasks.glue_tasks.CopyFeffOutputs method)
(atomate.feff.firetasks.parse_outputs.AddPathsToFilepadTask method)
(atomate.feff.firetasks.parse_outputs.SpectrumToDbTask method)
(atomate.feff.firetasks.run_calc.RunFeffDirect method)
(atomate.feff.firetasks.write_inputs.WriteEXAFSPaths method)
(atomate.feff.firetasks.write_inputs.WriteFeffFromIOSet method)
(atomate.lammps.firetasks.parse_outputs.LammpsToDBTask method)
(atomate.lammps.firetasks.run_calc.RunLammpsDirect method)
(atomate.lammps.firetasks.run_calc.RunPackmol method)
(atomate.lammps.firetasks.write_inputs.WriteLammpsFromIOSet method)
(atomate.utils.tests.test_utils.Task1 method)
(atomate.utils.tests.test_utils.Task2 method)
(atomate.vasp.firetasks.glue_tasks.CheckBandgap method)
(atomate.vasp.firetasks.glue_tasks.CheckStability method)
(atomate.vasp.firetasks.glue_tasks.CopyVaspOutputs method)
(atomate.vasp.firetasks.neb_tasks.RunNEBVaspFake method)
(atomate.vasp.firetasks.neb_tasks.TransferNEBTask method)
(atomate.vasp.firetasks.neb_tasks.WriteNEBFromEndpoints method)
(atomate.vasp.firetasks.neb_tasks.WriteNEBFromImages method)
(atomate.vasp.firetasks.run_calc.RunBoltztrap method)
(atomate.vasp.firetasks.run_calc.RunNoVasp method)
(atomate.vasp.firetasks.run_calc.RunVaspCustodian method)
(atomate.vasp.firetasks.run_calc.RunVaspDirect method)
(atomate.vasp.firetasks.run_calc.RunVaspFake method)
(atomate.vasp.firetasks.write_inputs.ModifyIncar method)
(atomate.vasp.firetasks.write_inputs.WriteNormalmodeDisplacedPoscar method)
(atomate.vasp.firetasks.write_inputs.WriteTransmutedStructureIOSet method)
(atomate.vasp.firetasks.write_inputs.WriteVaspFromIOSet method)
(atomate.vasp.firetasks.write_inputs.WriteVaspFromPMGObjects method)
(atomate.vasp.firetasks.write_inputs.WriteVaspHSEBSFromPrev method)
(atomate.vasp.firetasks.write_inputs.WriteVaspNSCFFromPrev method)
(atomate.vasp.firetasks.write_inputs.WriteVaspSOCFromPrev method)
(atomate.vasp.firetasks.write_inputs.WriteVaspStaticFromPrev method)
RunBoltztrap (class in atomate.vasp.firetasks.run_calc)
RunCommand (class in atomate.common.firetasks.run_calc)
RunCustodianFromObjects (class in atomate.common.firetasks.run_calc)
RunFeffDirect (class in atomate.feff.firetasks.run_calc)
RunLammpsDirect (class in atomate.lammps.firetasks.run_calc)
RunNEBVaspFake (class in atomate.vasp.firetasks.neb_tasks)
RunNoVasp (class in atomate.vasp.firetasks.run_calc)
RunPackmol (class in atomate.lammps.firetasks.run_calc)
RunVaspCustodian (class in atomate.vasp.firetasks.run_calc)
RunVaspDirect (class in atomate.vasp.firetasks.run_calc)
RunVaspFake (class in atomate.vasp.firetasks.run_calc)
S
schema (atomate.vasp.drones.VaspDrone attribute)
set_analysis() (atomate.vasp.drones.VaspDrone static method)
setUp() (atomate.feff.firetasks.tests.test_tasks.TestTasks method)
(atomate.feff.fireworks.tests.test_fireworks.TestFireworks method)
(atomate.feff.workflows.tests.test_eels_workflows.TestEELSWorkflow method)
(atomate.feff.workflows.tests.test_exafs_scattering_paths.TestEXAFSPaths method)
(atomate.feff.workflows.tests.test_xas_workflows.TestXASWorkflow method)
(atomate.utils.testing.AtomateTest method)
(atomate.utils.tests.test_loaders.FuncTest method)
(atomate.utils.tests.test_utils.UtilsTests class method)
(atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp method)
(atomate.vasp.tests.test_setup.TestSetup method)
setup_copy() (atomate.common.firetasks.glue_tasks.CopyFiles method)
setUpClass() (atomate.vasp.firetasks.tests.test_copy.TestCopyVaspOutputs class method)
(atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp class method)
(atomate.vasp.tests.test_drones.VaspToDbTaskDroneTest class method)
(atomate.vasp.tests.test_setup.TestSetup class method)
SpectrumToDbTask (class in atomate.feff.firetasks.parse_outputs)
SubmissionFilter (class in atomate.vasp.submission_filter)
T
TagsBuilder (class in atomate.vasp.builders.tags)
Task1 (class in atomate.utils.tests.test_utils)
Task2 (class in atomate.utils.tests.test_utils)
TasksMaterialsBuilder (class in atomate.vasp.builders.tasks_materials)
tearDown() (atomate.utils.testing.AtomateTest method)
(atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp method)
(atomate.vasp.tests.test_setup.TestSetup method)
test() (atomate.vasp.submission_filter.SubmissionFilter method)
test_assimilate() (atomate.vasp.tests.test_drones.VaspToDbTaskDroneTest method)
test_bandstructure() (atomate.vasp.tests.test_drones.VaspToDbTaskDroneTest method)
test_copy_feff_outputs_task() (atomate.feff.firetasks.tests.test_tasks.TestTasks method)
test_eels_wflow_abatom_by_idx() (atomate.feff.workflows.tests.test_eels_workflows.TestEELSWorkflow method)
test_eels_wflow_abatom_by_symbol() (atomate.feff.workflows.tests.test_eels_workflows.TestEELSWorkflow method)
test_elnes_vs_exelfs() (atomate.feff.workflows.tests.test_eels_workflows.TestEELSWorkflow method)
test_env_chk() (atomate.utils.tests.test_utils.UtilsTests method)
test_exafs_paths_fw() (atomate.feff.fireworks.tests.test_fireworks.TestFireworks method)
test_feff_input_sets() (atomate.feff.workflows.tests.test_exafs_scattering_paths.TestEXAFSPaths method)
test_get_mongolike() (atomate.utils.tests.test_utils.UtilsTests method)
test_get_wf_from_spec_dict() (atomate.utils.tests.test_loaders.FuncTest method)
test_gzip_copy() (atomate.vasp.firetasks.tests.test_copy.TestCopyVaspOutputs method)
test_ioset_explicit() (atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp method)
test_ioset_implicit() (atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp method)
test_ioset_params() (atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp method)
test_modifyincar() (atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp method)
test_multi_parent() (atomate.utils.tests.test_loaders.FuncTest method)
test_passcalclocs() (atomate.common.firetasks.tests.test_glue_tasks.TestPassCalcLocs method)
test_paths() (atomate.feff.workflows.tests.test_exafs_scattering_paths.TestEXAFSPaths method)
test_plain_copy() (atomate.vasp.firetasks.tests.test_copy.TestCopyVaspOutputs method)
test_plain_copy_more() (atomate.vasp.firetasks.tests.test_copy.TestCopyVaspOutputs method)
test_pmgobjects() (atomate.vasp.firetasks.tests.test_write_vasp.TestWriteVasp method)
test_recursive_get_result() (atomate.utils.tests.test_utils.UtilsTests method)
test_relax2_copy() (atomate.vasp.firetasks.tests.test_copy.TestCopyVaspOutputs method)
test_runs_assimilate() (atomate.vasp.tests.test_drones.VaspToDbTaskDroneTest method)
test_setup() (atomate.vasp.tests.test_setup.TestSetup method)
test_ToDbTask() (atomate.common.firetasks.tests.test_parse_outputs.TestToDbTask method)
test_unittestsetup() (atomate.vasp.firetasks.tests.test_copy.TestCopyVaspOutputs method)
test_wflow_composition() (atomate.feff.workflows.tests.test_exafs_scattering_paths.TestEXAFSPaths method)
test_write_paths_task() (atomate.feff.firetasks.tests.test_tasks.TestTasks method)
test_xanes_vs_exafs() (atomate.feff.workflows.tests.test_xas_workflows.TestXASWorkflow method)
test_xas_wflow_abatom_by_idx() (atomate.feff.workflows.tests.test_xas_workflows.TestXASWorkflow method)
test_xas_wflow_abatom_by_symbol() (atomate.feff.workflows.tests.test_xas_workflows.TestXASWorkflow method)
TestCopyVaspOutputs (class in atomate.vasp.firetasks.tests.test_copy)
TestDrone (class in atomate.common.firetasks.tests.test_parse_outputs)
TestEELSWorkflow (class in atomate.feff.workflows.tests.test_eels_workflows)
TestEXAFSPaths (class in atomate.feff.workflows.tests.test_exafs_scattering_paths)
TestFireworks (class in atomate.feff.fireworks.tests.test_fireworks)
TestPassCalcLocs (class in atomate.common.firetasks.tests.test_glue_tasks)
TestSetup (class in atomate.vasp.tests.test_setup)
TestTasks (class in atomate.feff.firetasks.tests.test_tasks)
TestToDbTask (class in atomate.common.firetasks.tests.test_parse_outputs)
TestWriteVasp (class in atomate.vasp.firetasks.tests.test_write_vasp)
TestXASWorkflow (class in atomate.feff.workflows.tests.test_xas_workflows)
tid_to_int() (atomate.vasp.builders.tasks_materials.TasksMaterialsBuilder static method)
tid_to_str() (atomate.vasp.builders.tasks_materials.TasksMaterialsBuilder method)
ToDbTask (class in atomate.common.firetasks.parse_outputs)
TransferNEBTask (class in atomate.vasp.firetasks.neb_tasks)
U
UtilsTests (class in atomate.utils.tests.test_utils)
V
validate_doc() (atomate.vasp.drones.VaspDrone method)
VaspCalcDb (class in atomate.vasp.database)
VaspDrone (class in atomate.vasp.drones)
VaspToDbTaskDroneTest (class in atomate.vasp.tests.test_drones)
W
wf_from_input_template() (in module atomate.lammps.workflows.core)
WriteEXAFSPaths (class in atomate.feff.firetasks.write_inputs)
WriteFeffFromIOSet (class in atomate.feff.firetasks.write_inputs)
WriteLammpsFromIOSet (class in atomate.lammps.firetasks.write_inputs)
WriteNEBFromEndpoints (class in atomate.vasp.firetasks.neb_tasks)
WriteNEBFromImages (class in atomate.vasp.firetasks.neb_tasks)
WriteNormalmodeDisplacedPoscar (class in atomate.vasp.firetasks.write_inputs)
WriteTransmutedStructureIOSet (class in atomate.vasp.firetasks.write_inputs)
WriteVaspFromIOSet (class in atomate.vasp.firetasks.write_inputs)
WriteVaspFromPMGObjects (class in atomate.vasp.firetasks.write_inputs)
WriteVaspHSEBSFromPrev (class in atomate.vasp.firetasks.write_inputs)
WriteVaspNSCFFromPrev (class in atomate.vasp.firetasks.write_inputs)
WriteVaspSOCFromPrev (class in atomate.vasp.firetasks.write_inputs)
WriteVaspStaticFromPrev (class in atomate.vasp.firetasks.write_inputs)
X
XASFW (class in atomate.feff.fireworks.core)
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