Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
V
A
AdvancedSampler (class in PREDICT.processing.AdvancedSampler)
B
BaseSearchCV (class in PREDICT.processing.SearchCV)
BaseSearchCVfastr (class in PREDICT.processing.SearchCV)
BaseSearchCVJoblib (class in PREDICT.processing.SearchCV)
bbox_2D() (in module PREDICT.imagefeatures.texture_features)
(in module PREDICT.plotting.plot_images)
bbox_3D() (in module PREDICT.imagefeatures.texture_features)
best_params_ (PREDICT.processing.SearchCV.BaseSearchCV attribute)
best_score_ (PREDICT.processing.SearchCV.BaseSearchCV attribute)
C
CalcFeatures() (in module PREDICT.CalcFeatures)
chunks() (in module PREDICT.processing.SearchCV)
chunksdict() (in module PREDICT.processing.SearchCV)
cmp() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
compute_abs_dist_to_center() (in module PREDICT.imagefeatures.shape_features)
compute_area() (in module PREDICT.imagefeatures.shape_features)
compute_compactness() (in module PREDICT.imagefeatures.shape_features)
compute_confidence() (in module PREDICT.plotting.compute_CI)
compute_confidence_logit() (in module PREDICT.plotting.compute_CI)
compute_covariance_matrix() (in module PREDICT.imagefeatures.shape_features)
compute_cvar() (in module PREDICT.imagefeatures.shape_features)
compute_dist_to_center() (in module PREDICT.imagefeatures.shape_features)
compute_evar() (in module PREDICT.imagefeatures.shape_features)
compute_mean_radius() (in module PREDICT.imagefeatures.shape_features)
compute_perimeter() (in module PREDICT.imagefeatures.shape_features)
compute_prax() (in module PREDICT.imagefeatures.shape_features)
compute_radial_distance() (in module PREDICT.imagefeatures.shape_features)
compute_roughness() (in module PREDICT.imagefeatures.shape_features)
construct_classifier() (in module PREDICT.classification.construct_classifier)
construct_SVM() (in module PREDICT.classification.construct_classifier)
convex_hull() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
convex_hull_points() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
count_parameters() (in module PREDICT.plotting.plot_barchart)
create_ensemble() (PREDICT.processing.SearchCV.BaseSearchCV method)
create_histogram() (in module PREDICT.imagefeatures.histogram_features)
crossval() (in module PREDICT.classification.crossval)
D
data_regularize() (in module PREDICT.helpers.orientation_functions)
decision_function() (PREDICT.processing.SearchCV.BaseSearchCV method)
(PREDICT.processing.SearchCV.Ensemble method)
delete_nonestimator_parameters() (in module PREDICT.processing.fitandscore)
E
ellipsoid_fit() (in module PREDICT.helpers.orientation_functions)
ellipsoid_plot() (in module PREDICT.helpers.orientation_functions)
Ensemble (class in PREDICT.processing.SearchCV)
example() (in module PREDICT.plotting.plot_ranked_scores)
exp_uniform (class in PREDICT.processing.AdvancedSampler)
F
findmutationdata() (in module PREDICT.genetics.genetic_processing)
fit() (PREDICT.classification.estimators.RankedSVM method)
(PREDICT.featureselection.Relief.SelectMulticlassRelief method)
(PREDICT.featureselection.SelectGroups.SelectGroups method)
(PREDICT.featureselection.SelectIndividuals.SelectIndividuals method)
(PREDICT.featureselection.StatisticalTestThreshold.StatisticalTestThreshold method)
(PREDICT.featureselection.VarianceThreshold.VarianceThresholdMean method)
(PREDICT.processing.SearchCV.GridSearchCVJoblib method)
(PREDICT.processing.SearchCV.GridSearchCVfastr method)
(PREDICT.processing.SearchCV.RandomizedSearchCVJoblib method)
(PREDICT.processing.SearchCV.RandomizedSearchCVfastr method)
fit_and_score() (in module PREDICT.processing.fitandscore)
G
gabor_filter() (in module PREDICT.imagefeatures.texture_features)
(in module PREDICT.plotting.getfeatureimages)
gabor_filter_parallel() (in module PREDICT.imagefeatures.texture_features)
generate_boxplots() (in module PREDICT.plotting.plot_boxplot)
get_b_value() (in module PREDICT.IOparser.file_io)
get_center() (in module PREDICT.imagefeatures.shape_features)
get_coliage_features() (in module PREDICT.imagefeatures.coliage_features)
get_contour_boundary() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
get_contour_boundary_points() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
get_diff_in_out() (in module PREDICT.imagefeatures.histogram_features)
get_DTI_dicoms() (in module PREDICT.IOparser.file_io)
get_dti_features() (in module PREDICT.imagefeatures.dti_features)
get_dti_post_features() (in module PREDICT.imagefeatures.dti_features)
get_energy() (in module PREDICT.imagefeatures.histogram_features)
get_entropy() (in module PREDICT.imagefeatures.histogram_features)
get_GLCM_features() (in module PREDICT.imagefeatures.texture_features)
get_GLCM_features_multislice() (in module PREDICT.imagefeatures.texture_features)
get_GLRLM_features() (in module PREDICT.imagefeatures.texture_features)
get_GLSZM_features() (in module PREDICT.imagefeatures.texture_features)
get_gradient() (in module PREDICT.IOparser.file_io)
get_histogram_features() (in module PREDICT.imagefeatures.histogram_features)
get_image_features() (in module PREDICT.imagefeatures.get_features)
get_kurtosis() (in module PREDICT.imagefeatures.histogram_features)
get_LBP_features() (in module PREDICT.imagefeatures.texture_features)
get_log_features() (in module PREDICT.imagefeatures.log_features)
get_masked_slices_image() (in module PREDICT.helpers.image_helper)
(in module PREDICT.imagefeatures.image_helper)
get_masked_slices_mask() (in module PREDICT.helpers.image_helper)
(in module PREDICT.imagefeatures.image_helper)
get_masked_voxels() (in module PREDICT.helpers.image_helper)
(in module PREDICT.imagefeatures.image_helper)
get_max() (in module PREDICT.imagefeatures.histogram_features)
get_mean() (in module PREDICT.imagefeatures.histogram_features)
get_median() (in module PREDICT.imagefeatures.histogram_features)
get_min() (in module PREDICT.imagefeatures.histogram_features)
get_NGTDM_features() (in module PREDICT.imagefeatures.texture_features)
get_not_voi_voxels() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
get_orientation_features() (in module PREDICT.imagefeatures.orientation_features)
get_patient_features() (in module PREDICT.imagefeatures.patient_features)
get_peak_position() (in module PREDICT.imagefeatures.histogram_features)
get_phase_features() (in module PREDICT.imagefeatures.phase_features)
get_positions() (in module PREDICT.IOparser.file_io)
get_quartile_range() (in module PREDICT.imagefeatures.histogram_features)
get_range() (in module PREDICT.imagefeatures.histogram_features)
get_semantic_features() (in module PREDICT.imagefeatures.semantic_features)
get_shape_features() (in module PREDICT.imagefeatures.shape_features)
get_shape_features_2D() (in module PREDICT.imagefeatures.shape_features)
get_shape_features_3D() (in module PREDICT.imagefeatures.shape_features)
get_skewness() (in module PREDICT.imagefeatures.histogram_features)
get_smooth_contour() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
get_statistical_moments() (in module PREDICT.imagefeatures.dti_features)
get_std() (in module PREDICT.imagefeatures.histogram_features)
get_texture_features() (in module PREDICT.imagefeatures.texture_features)
get_vessel_features() (in module PREDICT.imagefeatures.vessel_features)
get_voi_voxels() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
GetArrayFromImage() (in module PREDICT.helpers.sitk_helper)
(in module PREDICT.imagefeatures.sitk_helper)
getfeatureimages() (in module PREDICT.plotting.getfeatureimages)
GetImageFromArray() (in module PREDICT.helpers.sitk_helper)
(in module PREDICT.imagefeatures.sitk_helper)
grid_scores_ (PREDICT.processing.SearchCV.BaseSearchCV attribute)
GridSearchCVfastr (class in PREDICT.processing.SearchCV)
GridSearchCVJoblib (class in PREDICT.processing.SearchCV)
I
ICC() (in module PREDICT.processing.ICC)
ICC_anova() (in module PREDICT.processing.ICC)
inverse_transform() (PREDICT.processing.SearchCV.BaseSearchCV method)
(PREDICT.processing.SearchCV.Ensemble method)
is_empty() (in module PREDICT.classification.RankedSVM)
L
linstretch() (in module PREDICT.plotting.linstretch)
load_config() (in module PREDICT.IOparser.config_io)
(in module PREDICT.IOparser.config_io_CalcFeatures)
(in module PREDICT.IOparser.config_io_classifier)
load_config_XNAT() (in module PREDICT.genetics.genetic_processing)
load_data() (in module PREDICT.IOparser.file_io)
load_dicom() (in module PREDICT.IOparser.file_io)
load_DTI() (in module PREDICT.IOparser.file_io)
load_DTI_post() (in module PREDICT.IOparser.file_io)
load_features() (in module PREDICT.trainclassifier)
load_genetic_file() (in module PREDICT.genetics.genetic_processing)
load_genetic_XNAT() (in module PREDICT.genetics.genetic_processing)
load_image_features() (in module PREDICT.IOparser.file_io)
load_images() (in module PREDICT.CalcFeatures)
load_mutation_status() (in module PREDICT.genetics.genetic_processing)
local_convex_hull() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
local_convex_hull_points() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
log_uniform (class in PREDICT.processing.AdvancedSampler)
M
main() (in module PREDICT.plotting.plot_barchart)
(in module PREDICT.plotting.plot_ROC)
(in module PREDICT.plotting.plot_SVM)
(in module PREDICT.plotting.plot_SVR)
(in module PREDICT.plotting.plot_boxplot)
(in module PREDICT.plotting.plot_ranked_scores)
(in module PREDICT.plotting.plotminmaxresponse)
(in module PREDICT.plotting.scatterplot)
multi_class_auc() (in module PREDICT.classification.metrics)
multi_class_auc_score() (in module PREDICT.classification.metrics)
multi_class_relief() (PREDICT.featureselection.Relief.SelectMulticlassRelief method)
N
neg_dual_func() (in module PREDICT.classification.RankedSVM)
nocrossval() (in module PREDICT.classification.crossval)
P
pairwise_auc() (in module PREDICT.classification.metrics)
paracheck() (in module PREDICT.plotting.plot_barchart)
performance_multilabel() (in module PREDICT.classification.metrics)
performance_singlelabel() (in module PREDICT.classification.metrics)
plot_barchart() (in module PREDICT.plotting.plot_barchart)
plot_bars() (in module PREDICT.plotting.plot_barchart)
plot_im_and_overlay() (in module PREDICT.plotting.plot_images)
plot_ranked_images() (in module PREDICT.plotting.plot_ranked_scores)
plot_ranked_percentages() (in module PREDICT.plotting.plot_ranked_scores)
plot_ranked_posteriors() (in module PREDICT.plotting.plot_ranked_scores)
plot_ranked_scores() (in module PREDICT.plotting.plot_ranked_scores)
plot_ROC() (in module PREDICT.plotting.plot_ROC)
plot_ROC_CIc() (in module PREDICT.plotting.plot_ROC)
plot_single_ROC() (in module PREDICT.plotting.plot_ROC)
plot_single_SVR() (in module PREDICT.plotting.plot_SVR)
plot_SVM() (in module PREDICT.plotting.plot_SVM)
PREDICT (module)
predict() (PREDICT.classification.estimators.RankedSVM method)
(PREDICT.processing.SearchCV.BaseSearchCV method)
(PREDICT.processing.SearchCV.Ensemble method)
PREDICT.addexceptions (module)
PREDICT.CalcFeatures (module)
PREDICT.classification (module)
PREDICT.classification.construct_classifier (module)
PREDICT.classification.crossval (module)
PREDICT.classification.estimators (module)
PREDICT.classification.metrics (module)
PREDICT.classification.parameter_optimization (module)
PREDICT.classification.RankedSVM (module)
PREDICT.featureselection (module)
PREDICT.featureselection.Relief (module)
PREDICT.featureselection.SelectGroups (module)
PREDICT.featureselection.SelectIndividuals (module)
PREDICT.featureselection.StatisticalTestThreshold (module)
PREDICT.featureselection.VarianceThreshold (module)
PREDICT.genetics (module)
PREDICT.genetics.genetic_processing (module)
PREDICT.helpers (module)
PREDICT.helpers.contour_functions (module)
PREDICT.helpers.contour_functions_3d (module)
PREDICT.helpers.image_helper (module)
PREDICT.helpers.orientation_functions (module)
PREDICT.helpers.sitk_helper (module)
PREDICT.imagefeatures (module)
PREDICT.imagefeatures.coliage_features (module)
PREDICT.imagefeatures.contour_functions (module)
PREDICT.imagefeatures.dti_features (module)
PREDICT.imagefeatures.get_features (module)
PREDICT.imagefeatures.histogram_features (module)
PREDICT.imagefeatures.image_helper (module)
PREDICT.imagefeatures.log_features (module)
PREDICT.imagefeatures.orientation_features (module)
PREDICT.imagefeatures.patient_features (module)
PREDICT.imagefeatures.phase_features (module)
PREDICT.imagefeatures.semantic_features (module)
PREDICT.imagefeatures.shape_features (module)
PREDICT.imagefeatures.sitk_helper (module)
PREDICT.imagefeatures.texture_features (module)
PREDICT.imagefeatures.vessel_features (module)
PREDICT.IOparser (module)
PREDICT.IOparser.config_io (module)
PREDICT.IOparser.config_io_CalcFeatures (module)
PREDICT.IOparser.config_io_classifier (module)
PREDICT.IOparser.file_io (module)
PREDICT.plotting (module)
PREDICT.plotting.compute_CI (module)
PREDICT.plotting.getfeatureimages (module)
PREDICT.plotting.linstretch (module)
PREDICT.plotting.plot_barchart (module)
PREDICT.plotting.plot_boxplot (module)
PREDICT.plotting.plot_images (module)
PREDICT.plotting.plot_ranked_scores (module)
PREDICT.plotting.plot_ROC (module)
PREDICT.plotting.plot_SVM (module)
PREDICT.plotting.plot_SVR (module)
PREDICT.plotting.plotminmaxresponse (module)
PREDICT.plotting.scatterplot (module)
PREDICT.processing (module)
PREDICT.processing.AdvancedSampler (module)
PREDICT.processing.fitandscore (module)
PREDICT.processing.ICC (module)
PREDICT.processing.Imputer (module)
PREDICT.processing.SearchCV (module)
PREDICT.StatisticalTestFeatures (module)
PREDICT.trainclassifier (module)
predict_log_proba() (PREDICT.processing.SearchCV.BaseSearchCV method)
(PREDICT.processing.SearchCV.Ensemble method)
predict_proba() (PREDICT.classification.estimators.RankedSVM method)
(PREDICT.processing.SearchCV.BaseSearchCV method)
(PREDICT.processing.SearchCV.Ensemble method)
PREDICTAssertionError
PREDICTError
PREDICTIndexError
PREDICTIOError
PREDICTKeyError
PREDICTNotImplementedError
PREDICTTypeError
PREDICTValueError
preprocess() (PREDICT.processing.SearchCV.BaseSearchCV method)
process_fit() (PREDICT.processing.SearchCV.BaseSearchCV method)
R
random_search_parameters() (in module PREDICT.classification.parameter_optimization)
RandomizedSearchCVfastr (class in PREDICT.processing.SearchCV)
RandomizedSearchCVJoblib (class in PREDICT.processing.SearchCV)
RankedSVM (class in PREDICT.classification.estimators)
RankSVM_test() (in module PREDICT.classification.RankedSVM)
RankSVM_test_original() (in module PREDICT.classification.RankedSVM)
RankSVM_train() (in module PREDICT.classification.RankedSVM)
RankSVM_train_old() (in module PREDICT.classification.RankedSVM)
refit_and_score() (PREDICT.processing.SearchCV.BaseSearchCV method)
replacenan() (in module PREDICT.imagefeatures.phase_features)
(in module PREDICT.processing.fitandscore)
rms_score() (in module PREDICT.processing.SearchCV)
ROC_thresholding() (in module PREDICT.plotting.plot_ROC)
rvs() (PREDICT.processing.AdvancedSampler.exp_uniform method)
(PREDICT.processing.AdvancedSampler.log_uniform method)
S
sar_score() (in module PREDICT.processing.SearchCV)
save_gabor_features() (in module PREDICT.plotting.getfeatureimages)
save_LBP_features() (in module PREDICT.plotting.getfeatureimages)
score() (PREDICT.processing.SearchCV.BaseSearchCV method)
SelectGroups (class in PREDICT.featureselection.SelectGroups)
SelectIndividuals (class in PREDICT.featureselection.SelectIndividuals)
SelectMulticlassRelief (class in PREDICT.featureselection.Relief)
selfeat_variance() (in module PREDICT.featureselection.VarianceThreshold)
single_class_relief() (PREDICT.featureselection.Relief.SelectMulticlassRelief method)
singleiteration() (in module PREDICT.classification.crossval)
slicer() (in module PREDICT.plotting.plot_images)
sort_points() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
StatisticalTestFeatures() (in module PREDICT.StatisticalTestFeatures)
StatisticalTestThreshold (class in PREDICT.featureselection.StatisticalTestThreshold)
T
trainclassifier() (in module PREDICT.trainclassifier)
transform() (PREDICT.featureselection.Relief.SelectMulticlassRelief method)
(PREDICT.featureselection.SelectGroups.SelectGroups method)
(PREDICT.featureselection.SelectIndividuals.SelectIndividuals method)
(PREDICT.featureselection.StatisticalTestThreshold.StatisticalTestThreshold method)
(PREDICT.featureselection.VarianceThreshold.VarianceThresholdMean method)
(PREDICT.processing.SearchCV.BaseSearchCV method)
(PREDICT.processing.SearchCV.Ensemble method)
turn() (in module PREDICT.helpers.contour_functions)
(in module PREDICT.helpers.contour_functions_3d)
(in module PREDICT.imagefeatures.contour_functions)
V
VarianceThresholdMean (class in PREDICT.featureselection.VarianceThreshold)
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