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  • About pygtftk
    • warning about supported GTF file formats
    • Naming conventions
  • Installing pygtftk/gtftk
  • Help on gtftk Unix commands
    • Main parser arguments of gtftk
    • Command-wide arguments
    • Commands from section ‘information’
    • Commands from section ‘Editing’
    • Commands from section ‘selection’
    • Commands from section ‘convertion’
    • Commands from section ‘annotation’
    • Commands from section ‘coordinates’
    • Commands from section ‘sequence’
    • Commands from section ‘coverage’
    • Commands from section ‘miscellaneous’
  • Help on Python package (pygtftk)
    • The GTF class
    • The FASTA class
    • The TAB class
    • The Line module
    • The gtftk.utils module
  • The gtftk.bam.bam_coverage_matrix module
  • Writing your own commands

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