CD:

pfam00035

Description: dsrm, Double-stranded RNA binding motif. Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localization of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.
CD status: Full-length sequences, including 3D structure if known. Alignment from source, reindexed to representative
Source: Pfam[US], Pfam[UK]
Created: 12-Sep-2001
References: PubMed
Taxonomy spanned:
root -> 
[ 81]  from  cellular organisms
[ 7]  from  Viruses
Aligned sequences: 89
Representative: Consensus sequence:
Aligned range: 1-67
Sequence:
PKSALQELAQKRKLPLPEYELVEEEGPAHAPRFTVEVTVGGKTYFEGSGSSKKEAKQNAA
EAALRIL

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  3D PDB-Id/gi Definition
1DI2 A Xenopus laevis [CD]
1QU6 A Homo sapiens [CD]
1EKZ A Drosophila melanogaster [CD]
7531276 RIBONUCLEASE III (RNASE III) [CD]
7531197 RIBONUCLEASE III (RNASE III) [CD]
1710609 RIBONUCLEASE III (RNASE III) [CD]
7531189 RIBONUCLEASE III (RNASE III) [CD]
7531188 RIBONUCLEASE III (RNASE III) [CD]
7531275 RIBONUCLEASE III (RNASE III) [CD]
2500554 RIBONUCLEASE III (RNASE III) [CD]
6094109 RIBONUCLEASE III (RNASE III) [CD]
2500555 HYPOTHETICAL 27.1 KDA PROTEIN SLR0346 [CD]
2160163 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1 [CD]
2160163 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1 [CD]
1710608 RIBONUCLEASE III (RNASE III) [CD]
1173093 RIBONUCLEASE III (RNASE III) [CD]
133151 RIBONUCLEASE III (RNASE III) [CD]
7531196 RIBONUCLEASE III (RNASE III) [CD]
7531190 RIBONUCLEASE III (RNASE III) [CD]
2500552 RIBONUCLEASE III (RNASE III) [CD]
6226018 RIBONUCLEASE III (RNASE III) [CD]
2500558 PUTATIVE RIBONUCLEASE III (RNASE III) [CD]
7531193 RIBONUCLEASE III (RNASE III) [CD]
7531191 RIBONUCLEASE III (RNASE III) [CD]
2500556 PUTTIVE PROTEIN A464R [CD]
2500553 RIBONUCLEASE III (RNASE III) [CD]
3850247 Coltivirus JKT-7075 segment 8 Vp8 gene, complete cds [CD]
458490 Caenorhabditis elegans chromosome III clone T20G5 [CD]
458490 Caenorhabditis elegans chromosome III clone T20G5 [CD]
3334379 TAR RNA-BINDING PROTEIN 2 (PROTAMINE-1 RNA BINDING PROTEIN) (PRM-1 RNA BINDING PROTEIN) [CD]
3334379 TAR RNA-BINDING PROTEIN 2 (PROTAMINE-1 RNA BINDING PROTEIN) (PRM-1 RNA BINDING PROTEIN) [CD]
3290198 Homo sapiens [CD]
3290198 Homo sapiens [CD]
3290198 Homo sapiens [CD]
3334381 DOUBLE STRANDED RNA BINDING PROTEIN A (XLRBPA) [CD]
9789804 DOUBLE-STRANDED RNA-BINDING PROTEIN STAUFEN HOMOLOG [CD]
9789804 DOUBLE-STRANDED RNA-BINDING PROTEIN STAUFEN HOMOLOG [CD]
1519659 Caenorhabditis elegans chromosome X clone F55A4 strain Bristol N2 [CD]
1519659 Caenorhabditis elegans chromosome X clone F55A4 strain Bristol N2 [CD]
1519663 Caenorhabditis elegans chromosome X clone F55A4 strain Bristol N2 [CD]
1519663 Caenorhabditis elegans chromosome X clone F55A4 strain Bristol N2 [CD]
1519663 Caenorhabditis elegans chromosome X clone F55A4 strain Bristol N2 [CD]
1519663 Caenorhabditis elegans chromosome X clone F55A4 strain Bristol N2 [CD]
134950 MATERNAL EFFECT PROTEIN STAUFEN [CD]
134950 MATERNAL EFFECT PROTEIN STAUFEN [CD]
134950 MATERNAL EFFECT PROTEIN STAUFEN [CD]
134950 MATERNAL EFFECT PROTEIN STAUFEN [CD]
532315 NF90 protein [CD]
532315 NF90 protein [CD]
2829669 DOUBLE-STRANDED RNA-SPECIFIC EDITASE 1 (DSRNA ADENOSINE DEAMINASE) (RNA EDITING ENZYME 1) [CD]
2829669 DOUBLE-STRANDED RNA-SPECIFIC EDITASE 1 (DSRNA ADENOSINE DEAMINASE) (RNA EDITING ENZYME 1) [CD]
1814270 Rattus norvegicus double-stranded RNA specific adenosine deaminase (RED2) mRNA, and translated products [CD]
1814270 Rattus norvegicus double-stranded RNA specific adenosine deaminase (RED2) mRNA, and translated products [CD]
7290203 Drosophila melanogaster chromosome X [CD]
7290203 Drosophila melanogaster chromosome X [CD]
125527 INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEIN KINASE (INTERFERON-INDUCIBLE RNA-DEPENDENT PROTEIN KINASE) (P68 KINASE) (P1/EIF-2A PROTEIN KINASE) [CD]
2507204 INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEIN KINASE (INTERFERON-INDUCIBLE RNA-DEPENDENT PROTEIN KINASE) (P68 KINASE) (P1/EIF-2A PROTEIN KINASE) (SERINE/THREONINE-PROTEIN KINASE TIK) [CD]
2507204 INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEIN KINASE (INTERFERON-INDUCIBLE RNA-DEPENDENT PROTEIN KINASE) (P68 KINASE) (P1/EIF-2A PROTEIN KINASE) (SERINE/THREONINE-PROTEIN KINASE TIK) [CD]
468373 RNA-dependent initiation factor-2 kinase [CD]
465071 PROTEIN E3 [CD]
2984731 Orf virus interferon resistance determinant protein (OV20.0L) gene, complete cds; and RNA polymerase subunit homolog (OV20.3L) gene, partial cds [CD]
673456 M.musculus Tenr mRNA for RNA binding protein, and translated products [CD]
1706532 DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE (DRADA) (136 KDA DOUBLE-STRANDED RNA BINDING PROTEIN) (P136) (K88DSRBP) [CD]
1706532 DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE (DRADA) (136 KDA DOUBLE-STRANDED RNA BINDING PROTEIN) (P136) (K88DSRBP) [CD]
1706532 DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE (DRADA) (136 KDA DOUBLE-STRANDED RNA BINDING PROTEIN) (P136) (K88DSRBP) [CD]
1932813 Xenopus laevis dsRNA adenosine deaminase (dsRAD-1) mRNA, and translated products [CD]
1932813 Xenopus laevis dsRNA adenosine deaminase (dsRAD-1) mRNA, and translated products [CD]
586013 SON PROTEIN (SON3) [CD]
465898 HYPOTHETICAL HELICASE K12H4.8 IN CHROMOSOME III [CD]
4490937 Homo sapiens mRNA for hypothetical helicase K12H4.8-like protein, partial, and translated products [CD]
2500557 RIBONUCLEASE III (RNASE III) [CD]
1350789 60S RIBOSOMAL PROTEIN L3, MITOCHONDRIAL PRECURSOR (YML3) [CD]
2668620 Acyrthosiphon pisum virus protein P1 gene, complete cds; and protein P2 gene, partial cds [CD]
3850201 Coltivirus JKT-6423 vp12 gene, complete cds [CD]
129540 DOUBLE-STRAND-SPECIFIC PAC1 RIBONUCLEASE (HCS PROTEIN) [CD]
2388673 Drosophila C virus strain EB, complete genome [CD]
3913434 ATP-DEPENDENT RNA HELICASE A (NUCLEAR DNA HELICASE II) (NDH II) (DEAD-BOX PROTEIN 9) (MHEL-5) [CD]
3913434 ATP-DEPENDENT RNA HELICASE A (NUCLEAR DNA HELICASE II) (NDH II) (DEAD-BOX PROTEIN 9) (MHEL-5) [CD]
3650397 Sciara ocellaris [CD]
3650397 Sciara ocellaris [CD]
127156 DOSAGE COMPENSATION REGULATOR (MALE-LESS PROTEIN) (NO ACTION POTENTIAL PROTEIN) [CD]
127156 DOSAGE COMPENSATION REGULATOR (MALE-LESS PROTEIN) (NO ACTION POTENTIAL PROTEIN) [CD]
3913436 PROBABLE ATP-DEPENDENT RNA HELICASE A (NUCLEAR DNA HELICASE II) (NDH II) [CD]
3913436 PROBABLE ATP-DEPENDENT RNA HELICASE A (NUCLEAR DNA HELICASE II) (NDH II) [CD]
466149 HYPOTHETICAL 80.5 KD PROTEIN ZK632.2 IN CHROMOSOME III [CD]
3283023 Caenorhabditis elegans putative RNA adenosine deaminase mRNA, complete cds [CD]
12643664 DOUBLE-STRANDED RNA-BINDING PROTEIN STAUFEN HOMOLOG [CD]
3334380 TAR RNA-BINDING PROTEIN 2 (TRANS-ACTIVATION RESPONSIVE RNA-BINDING PROTEIN) [CD]
for