Input VCF file:
Sample Name:
Alleles:
Prediction Algorithms:

---

Epitope Lengths:
Peptide Sequence Length:
Gene Expression File: Select a file
Transcript Expression File: Select a file
Normal SNVs Coverage File: Select a file
Normal Indels Coverage File: Select a file
Tumor DNA SNVs Coverage File: Select a file
Tumor DNA Indels Coverage File: Select a file
Tumor RNA SNVs Coverage File: Select a file
Tumor RNA Indels Coverage File: Select a file
NetChop Method: Skip NetChop C term 3.0 20S 3.0
NetChop Prediction Threshold:
NetMHC Stabpan:
Top Result Per Mutation:
Top Score Metric: Median Score Lowest Score
Binding Threshold:
Minimum Fold Change:
Expression Value:
Normal Coverage Cutoff:
Tumor DNA Coverage Cutoff:
Tumor RNA Coverage Cutoff:
Normal VAF Cutoff:
Tumor DNA VAF Cutoff:
Tumor RNA VAF Cutoff:
FASTA Size:
IEDB Retries:
Downstream Sequence Length:
Keep Tmp Files: