[console_scripts]
sequana = sequana.scripts.main:main
sequana_bam_splitter = sequana.scripts.bam_splitter:main
sequana_compressor = sequana.scripts.compressor:main
sequana_coverage = sequana.scripts.coverage:main
sequana_lane_merging = sequana.scripts.lane_merging:main
sequana_mapping = sequana.scripts.mapping:main
sequana_start_pipeline = sequana.scripts.start_pipeline:main
sequana_substractor = sequana.scripts.substractor:main
sequana_taxonomy = sequana.scripts.taxonomy:main
sequana_vcf_filter = sequana.scripts.vcf_filter:main
sequanix = sequana.gui.sequana_gui:main

[multiqc.hooks.v1]
before_config = sequana.multiqc.config:load_config

[multiqc.modules.v1]
sequana_bamtools_stats = sequana.multiqc.bamtools_stats:MultiqcModule
sequana_coverage = sequana.multiqc.coverage:MultiqcModule
sequana_isoseq = sequana.multiqc.isoseq:MultiqcModule
sequana_isoseq_qc = sequana.multiqc.isoseq_qc:MultiqcModule
sequana_kraken = sequana.multiqc.kraken:MultiqcModule
sequana_pacbio_amplicon = sequana.multiqc.pacbio_amplicon:MultiqcModule
sequana_pacbio_qc = sequana.multiqc.pacbio_qc:MultiqcModule
sequana_quality_control = sequana.multiqc.quality_control:MultiqcModule

[sequana.module]
sequana_coverage = sequana.modules_report.coverage:CoverageModule
sequana_summary = sequana.modules_report.summary:SummaryModule
sequana_variant_calling = sequana.modules_report.variant_calling:VariantCallingModule

